I have some untested ideas, and opinions on this.
First, I actually decided I don’t like the idea of the Meteor 1.3 imports folder. Just make everything lazy loading, and let the developer decide where to import things. Except perhaps CSS.
React naming components: I used to structure my apps like this:
client
├── components
│   ├── DumbSpinner
│   │   ├── DumbSpinner.jsx
│   │   └── DumbSpinner.scss
│   ├── EditModal
│   │   ├── EditModal.jsx
│   │   └── EditModal.scss
│   ├── Greeter
│   │   └── Greeter.jsx
│   ├── IconButton
│   │   ├── IconButton.jsx
│   │   └── IconButton.scss
│   ├── Modal
│   │   ├── Modal.jsx
│   │   └── Modal.scss
│   ├── NewsPopup
│   │   ├── NewsPopup.jsx
│   │   └── NewsPopup.scss
That way every component is tucked away with its CSS. Though in some cases, it might be a good move to inline your styles. A few of us just had a great discussion about inline styles that you may want to read: Inline styles with React - thoughts?
Now with modules, I’m thinking of maybe changing up my structure a bit, and perhaps going for something like this:
client
└── components
    ├── blog
    │   ├── blog.jsx
    │   └── blog.scss
    └── user-account
        ├── user-account.jsx
        └── user-account.scss
And each JSX file has several React components that are related inside of it. Then I could do cool things like this, when I want to use these:
import {BlogList, BlogItem} from '../components/blog/blog.jsx';
I feel like with components broken down more into stateless components, you could wind up in file hell where you have a whole bunch of files that just have 8-12 lines of code in it, and I’m not sure if I like that kind of setup. I’m curious what other React users think of this idea.
Side note: I’ve seen some people just make folders for components, and name the code inside index.jsx. I personally don’t like this, because if I have 6 tabs open, they’re all labeled “index.jsx” and I can’t tell what’s what.