I noticed that packages get concatenated, where as applications in development do not. So, the solution was to convert the application to a package. Started doing it by hand, was taking forever to order the files. Now, there might already be tools for doing this but if not here’s mine: https://gist.github.com/dj-foxxy/2e6defd2cdbf14afc441
Placed in the root of a Meteor application, it will spit out most of the package.js so that your files load in the same order as Meteor loads them. I didn’t implement everything, just what I needed, but it’s a start (unless something already exists, then it’s a step backwards).